PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3823s0010.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HSF
Protein Properties Length: 508aa    MW: 55610 Da    PI: 4.5507
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3823s0010.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.7e-35371282102
                             HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS
            HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 
                             Fl+k+y++++d++++ ++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +
  SapurV1A.3823s0010.2.p  37 FLSKTYDMVDDPATDAVVSWSSTNNSFVVWNLPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLR 114
                             9****************************************************************999.........********** PP

                             XXXXXXXXXXXXXX CS
            HSF_DNA-bind  89 gkkellekikrkks 102
                             g+k+ll+ i r+k 
  SapurV1A.3823s0010.2.p 115 GQKHLLRIISRRKP 128
                             ***********986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3927120IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6033126IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.04E-3433126IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.4E-3037126IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-203760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434076100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-2088100IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MDGTISSASG GDASTSGGGA QAASVPMASQ SNAPPPFLSK TYDMVDDPAT DAVVSWSSTN  60
NSFVVWNLPE FSRDLLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKHLL  120
RIISRRKPAH GHANQQPQQP HGQNSSVAAC VEVGKFGLEE EVERLKRDKN VLMQELVRLR  180
QQQQSTDSQL QTMVQRLQGM EQRQQQMMSF LAKAMQSPSF LAQFVQQQND SNRRITEANK  240
KRRLKQEDVL ENEGSSSPDG QIVKYQPLMN EAAKGMLRQI LKMDPSSKLE SYDNNLGAKD  300
GGSSSSCTSG VTLQEVLPTL GQSTHIPAAF GISKQPTTAI SEIQSSLPIA SSEKFTASQF  360
PDISMLVGDQ GAPSLPISQA DVTMPQVSQM PEMVPENISD IPVEDYMEPE TSNGGFIDPA  420
SLGIDGIIPI DIDNISPDPD IDALLDNSSF WYDLLVQSPV PEDIESSSVE GKANGNDVQP  480
NANGWDKAQH VEQLTEQMGL LTSDKKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-271812610129Heat shock factor protein 1
5d5v_B8e-271812610129Heat shock factor protein 1
5d5v_D8e-271812610129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238245NKKRRLKQ
2239244KKRRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9055650.0JF905565.1 Populus simonii clone JL heat shock transcription factor (HsfA1d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303429.20.0heat shock transcription factor family protein
SwissprotQ401521e-168HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBLA0A0N6WKZ70.0A0A0N6WKZ7_9R
STRINGPOPTR_0003s09370.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32330.11e-131heat shock transcription factor A1D